Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11194474 chr10:110969725 A/T 0.000133 502 31.47 32.13 32.1 KM Plot
THCA rs111976570 chr2:87014112 A/C 5.3E-9 485 31.93 28.12 27.4 KM Plot
THCA rs111988830 chr14:24666856 C/T 7.46E-11 484 31.7 31.77 14.98 KM Plot
THCA rs11202794 chr10:90394304 C/T 3.8E-5 490 32.9 31.03 27.02 KM Plot
THCA rs112030580 chr1:41558441 A/G 1.25E-7 501 27.33 30.43 31.92 KM Plot
THCA rs112043140 chr3:46585022 C/T 3.59E-5 484 31.85 31.5 23.62 KM Plot
THCA rs112069023 chr10:105034518 C/T 2.34E-5 492 31.03 35.08 36.3 KM Plot
THCA rs11209379 chr1:41500081 A/G 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs112117431 chr19:19992647 A/ATT 8.55E-5 498 32.03 29 31.47 KM Plot
THCA rs11212227 chr11:107296432 C/T 3.82E-11 503 31.7 29.73 33.7 KM Plot
THCA rs11212228 chr11:107298093 A/C 1.39E-8 503 31.68 30.43 23.38 KM Plot
THCA rs11212230 chr11:107304575 T/A 1.39E-8 503 31.68 30.43 23.38 KM Plot
THCA rs11212248 chr11:107323546 A/G 3.66E-11 502 31.7 29.73 33.7 KM Plot
THCA rs11219219 chr11:123531675 G/A 1.64E-6 503 31.83 28.85 24.67 KM Plot
THCA rs1122175 chr6:133089821 C/T 5.43E-9 496 31.47 35.2 23.53 KM Plot